Purdue University Graduate School
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Techniques For Deep Brain Imaging

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posted on 2021-12-09, 19:32 authored by Bowen WeiBowen Wei
Due to tissue scattering, the current two-photon in vivo brain imaging techniques have limited imaging depth. By inserting miniature invasive probes such as prism and GRIN lens into the brain tissue, researchers can increase the imaging depth from sub-millimeter-scale to several millimeter-scale deep brain regions. The major disadvantage of these techniques is the small field of view limited by the size of miniature invasive probes. In this thesis, we develop the Clear Optically Matched Panoramic Access Channel Technique (COMPACT) to increase the field of view of in vivo deep brain imaging. Instead of directly inserting and fixing miniature invasive probes inside the brain, we insert a quartz capillary to serve as a channel inside the brain. We can freely spin and move the imaging probe inside this channel and form a large volume image around this channel. This technique has been applied in this thesis to millimeter-scale structural, functional, and behavior studies in the deep brain region of mice.
Another effect caused by tissue scattering is optical aberration in deep brain imaging. Typical techniques, including COMPACT, utilize spatial light modulators (SLM) or deformable mirrors (DM) to compensate for the aberration. However, these instruments are expensive and susceptible to ultraviolet wavelength range and high light intensity. To circumvent these problems, we develop a technique to modulate optical waves with high accuracy and at low cost. The key idea is to fabricate a phase profile inside a quartz plate by printing a 3D refractive index profile through multi-photon ionization. This technique has been applied in this thesis to optical waves control in ultraviolet wavelength range and high light intensity, creating microlens and in situ optical aberration correction with high accuracy. Another method to increase the imaging depth of in vivo brain imaging is three-photon microscopy. Typical three-photon microscopy has a millimeter-scale imaging depth but low throughput due to the low repetition rate of laser sources. In this thesis, we develop a technique to increase the throughput of three-photon microscopy. Instead of scanning the whole field of view in raster order, we excite the fluorophore of each neuron with one laser pulse by random-access scanning. By efficiently using the laser power, we could increase the throughput with low tissue damage.


Degree Type

  • Doctor of Philosophy


  • Electrical and Computer Engineering

Campus location

  • West Lafayette

Advisor/Supervisor/Committee Chair

Meng Cui

Additional Committee Member 2

Kevin J. Webb

Additional Committee Member 3

Thomas M. Talavage

Additional Committee Member 4

Fengqing Maggie Zhu

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